Members
GENIA Project founder and principal investigator
GENIA Project coordination
- Nigel Collier: member 1998-2000; GENIA coordinator, 1998-2000
- Yuka Tateisi: member 1999-2006; Annotation coordinator, GENIA corpus Part-of-Speech annotation and Treebank, 1999-2006
- Sang-Zoo Lee: member 1999?-2001; Annotation coordinator, GENIA corpus Term annotation, 1999?-2001
- Tomoko Ohta: member 1999-present; Annotation coordinator, GENIA corpus Term, Event, and Relation annotations, and Other GENIA Project corpora, 1999-present
- Jin-Dong Kim: member 2001-2010; GENIA coordinator, 2001-2010
- Sampo Pyysalo: member 2008-present; GENIA coordinator, 2010-present
GENIA Project members
Researchers
- Teruyoshi Hishiki
- Norihiro Ogata
- Hyun Seok Park: event extraction, machine learning
- Hideki Mima: software tools, semantic clustering
- Tomaz Erjavec: TEI version of GENIA corpus version 3.0
- Yoshimasa Tsuruoka: named entity recognition, relation extraction, dependency parsing
- Kanae Oda: pathway curation
- Kenji Sagae: dependency parsing; GDep
- Rune Saetre: protein protein interaction, gene normalization
- Naoaki Okazaki: named entity recognition, acronym recognition, gene normalization
- Makoto Miwa: event extraction; EventMine, software tools; Xconc
Students
- Takeshi Sekimizu: IE, named entity recognition
- Chikashi Nobata: IE, named entity recognition
- Katsutoshi Ibushi
- Hisao Imai
- Tatsuhiko Miyagawa: IR, hypertext generation
- Jun'ichi Kazama: IE, named entity recognition
- Akane Yakushiji: IE, protein protein interaction
- Hong-Woo Chun: IE, disease gene association
- Katsuya Masuda: IR; MEDIE
- Junpei Takeuchi: software tools; Info-pubmed
- Yue Wang: IE, named entity recognition, domain adaptation, Treebank annotation
- Tadayoshi Hara: domain adaptation of HPSG parser
- Kazuhiro Yoshida: named entity recognition
- Kenta Oouchida: software tools
- Sumire Uematsu: semantic representation
- Nguyen Luu Thyu Ngan: co-reference resolution
- Han-Cheol Cho: IE, named entity recognition
- Pontus Stenetorp: IE, named entity recognition, software tools; brat, stav
- Goran Topic: software tools; brat, stav
- Yu Usami: IE, named entity recognition
GENIA Annotators
- Naoko Sumi: Document acquisition, OCR
- Yoriko Tanaka: Document acquisition, OCR
- Nobuyuki Ishizaka: Term annotation
- Yusuke Kubota: PoS tagging
- Kyoko Takano: PoS tagging
- Camille Yamada: PoS tagging
- Emi Maekawa: Treebank annotation
- Akiko Sakaguti: Treebank annotation
- Minako Ito: Treebank annotation
- Yo Shidahara: Event annotation
- Noriko Katsu: Event annotation
- Junko Matsuura: Event annotation
- Maki Niihori: Event annotation
- Yumiko Katsu-Kimura: Event and Relation annotation
- Hitomi Masuda: Event annotation
- Kana Sasaki: Event annotation
- Eriko Asato: Event annotation
- Ayami Kubota: Event annotation
- Yoshihiro Okuda: Event annotation
External collaborators
The following researchers have contributed to specific GENIA Project efforts.
- Sophia Ananiadou, National Centre for Text Mining (NaCTeM): NaCTeM coordination, BioNLP ST ID task
- Bruno Sobral, Virginia Bioinformatics Institute at Virginia Tech: VBI coordination, BioNLP ST ID task
- Rafal Rak, National Centre for Text Mining (NaCTeM): BioNLP ST ID task entity mention detection
- Dan Sullivan, Virginia Bioinformatics Institute at Virginia Tech: BioNLP ST ID task annotation
- Chunhong Mao, Virginia Bioinformatics Institute at Virginia Tech: BioNLP ST ID task annotation
- Chunxia Wang, Virginia Bioinformatics Institute at Virginia Tech: BioNLP ST ID task annotation
- Jian Su, Institute for Infocomm Research, Singapore: Coreference annotation
Support
The GENIA Project has been supported by
- Grant-in-Aid for Scientific Research on Priority Area "Genome Information Science" (MEXT, Japan),
- Grant-in-Aid for Scientific Research on Priority Area "Systems Genomics" (MEXT, Japan)
- Core Research for Evolutional Science & Technology (CREST) "Information Mobility Project" (JST, Japan)
- Solution Oriented Research for Science and Technology (SORST) (JST, Japan)
- Grant-in-Aid for Specially Promoted Research (MEXT, Japan)
- Genome Network Project (MEXT, Japan)
Website
The current GENIA website has been created by Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim and Yuka Tateisi.
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